Below are the relevant research articles for this semester's research topics. This will be updated with articles from the Canvas course website.
To access these sources, you MUST use the UF VPN client. Here is the link to install it: https://it.ufl.edu/ict/documentation/network-infrastructure/vpn/
If you are on the UF campus, you can just access these articles with the UF wi-fi network.
Chromatin binding/transcription factor OxsR:
Nitrogen Metabolism In Hypersaline Archaea:
Post-translational modification of lysine residues in Archaea:
Protein subunit interface - prediction
Standalone rhodanese domain proteins
Ubiquitin-like protein associated thioacid cassettes
Ubiquitin-like protein fusions
Additionally, here are some more relevant papers to the lab that will definitely help you out as well.
To access these sources, you MUST use the UF VPN client. Here is the link to install it: https://it.ufl.edu/ict/documentation/network-infrastructure/vpn/
If you are on the UF campus, you can just access these articles with the UF wi-fi network.
Chromatin binding/transcription factor OxsR:
- Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5764799/
- Structural Insights into Nonspecific Binding of DNA by TrmBL2, an Archaeal Chromatin Protein: https://www.sciencedirect.com/science/article/pii/S0022283615004581
Nitrogen Metabolism In Hypersaline Archaea:
- "The complete genome sequence of the archaeal isolate Halomicrobium sp. ZPS1 reveals the nitrogen metabolism characteristics under hypersaline conditions ": https://link.springer.com/article/10.1186/s13213-020-01575-8.
- "Diversity and Stratification of Archaea in a Hypersaline Microbial Mat": https://aem.asm.org/content/75/7/1801.short
Post-translational modification of lysine residues in Archaea:
- "Insights into the post‐translational modifications of archaeal Sis10b (Alba): lysine‐16 is methylated, not acetylated, and this does not regulate transcription or growth": https://doi.org/10.1111/mmi.13973
- "Structure and function of archaeal histones": https://doi.org/10.1371/journal.pgen.1007582
Protein subunit interface - prediction
- Prediction of the Archaeal Exosome and Its Connections with the Proteasome and the Translation and Transcription Machineries by a Comparative Genomic Approach: https://genome.cshlp.org/content/11/2/240.short
- Informatics and Multiplexing of Intact Protein Identification in Bacteria and Archaea: https://www.nature.com/articles/nbt1001-952
Standalone rhodanese domain proteins
- Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation: https://www.jbc.org/content/292/34/14026.short
- Rhodanese-Like Domain Protein UbaC and Its Role in Ubiquitin-Like Protein Modification and Sulfur Mobilization in Archaea: https://jb.asm.org/content/201/15/e00254-19.abstract
Ubiquitin-like protein associated thioacid cassettes
- Protein engineering by expressed protein ligation: https://www.sciencedirect.com/science/article/pii/S0076687900284140
- Biosynthesis of thiocarboxylic acid containing natural products: https://www.nature.com/articles/s41467-018-04747-y
Ubiquitin-like protein fusions
- Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii: https://www.nature.com/articles/nature08659
- Ubiquitin-Like Protein SAMP1 and JAMM/MPN+ Metalloprotease HvJAMM1 Constitute a System for Reversible Regulation of Metabolic Enzyme Activity in Archaea: https://doi.org/10.1371/journal.pone.0128399
Additionally, here are some more relevant papers to the lab that will definitely help you out as well.